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Sample GSM1572378 Query DataSets for GSM1572378
Status Public on Jun 03, 2015
Title genomic DNA from bone of subject 45
Sample type genomic
Source name Bone
Organism Homo sapiens
Characteristics tissue: bone
subject id: 45
Sex: female
sexpredictedusingdnamethdata: female
age: 75
dna methylation age: 73.6638417786368
Growth protocol DNA extracted from fresh frozen bone
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using AllPrep DNA/RNA mini kit according to standard instructions. Further, we applied phenol–chloroform–isoamyl alcohol as described in Delgado-Calle J et al (2012) Epigenetics 2012; 7: 83–91. Pubmed ID: 23124911.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64490 DNA methylation profiles of human bone samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.478284515
cg00000108 0.937519479
cg00000109 0.800036898
cg00000165 0.169210592
cg00000236 0.761222728
cg00000289 0.482990687
cg00000292 0.776800822
cg00000321 0.272424539
cg00000363 0.43137145
cg00000622 0.014964153
cg00000658 0.794412181
cg00000714 0.158528412
cg00000721 0.912553545
cg00000734 0.078097222
cg00000769 0.02987013
cg00000807 0.749728789
cg00000884 0.817172597
cg00000905 0.098003895
cg00000924 0.670225315
cg00000948 0.823571603

Total number of rows: 485577

Table truncated, full table size 10855 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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