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Sample GSM1572376 Query DataSets for GSM1572376
Status Public on Jun 03, 2015
Title genomic DNA from bone of subject 43
Sample type genomic
Source name Bone
Organism Homo sapiens
Characteristics tissue: bone
subject id: 43
Sex: female
sexpredictedusingdnamethdata: female
age: 83
dna methylation age: 66.7602184931402
Growth protocol DNA extracted from fresh frozen bone
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using AllPrep DNA/RNA mini kit according to standard instructions. Further, we applied phenol–chloroform–isoamyl alcohol as described in Delgado-Calle J et al (2012) Epigenetics 2012; 7: 83–91. Pubmed ID: 23124911.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64490 DNA methylation profiles of human bone samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.218858984
cg00000108 0.960494269
cg00000109 0.818067778
cg00000165 0.19545918
cg00000236 0.674671347
cg00000289 0.53737286
cg00000292 0.784015297
cg00000321 0.222999904
cg00000363 0.384260988
cg00000622 0.018895349
cg00000658 0.855705062
cg00000714 0.124946595
cg00000721 0.931711669
cg00000734 0.067942166
cg00000769 0.03189013
cg00000807 0.843656278
cg00000884 0.836814513
cg00000905 0.106107677
cg00000924 0.676789151
cg00000948 0.840576672

Total number of rows: 485577

Table truncated, full table size 10842 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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