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Sample GSM1572375 Query DataSets for GSM1572375
Status Public on Jun 03, 2015
Title genomic DNA from bone of subject 42
Sample type genomic
Source name Bone
Organism Homo sapiens
Characteristics tissue: bone
subject id: 42
Sex: female
sexpredictedusingdnamethdata: female
age: 79
dna methylation age: 70.2693076195442
Growth protocol DNA extracted from fresh frozen bone
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using AllPrep DNA/RNA mini kit according to standard instructions. Further, we applied phenol–chloroform–isoamyl alcohol as described in Delgado-Calle J et al (2012) Epigenetics 2012; 7: 83–91. Pubmed ID: 23124911.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64490 DNA methylation profiles of human bone samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.423986644
cg00000108 0.931307694
cg00000109 0.791144235
cg00000165 0.111250117
cg00000236 0.77233453
cg00000289 0.471859699
cg00000292 0.746563248
cg00000321 0.280120644
cg00000363 0.409785944
cg00000622 0.004038507
cg00000658 0.839842054
cg00000714 0.121669105
cg00000721 0.911456936
cg00000734 0.060427712
cg00000769 0.023877674
cg00000807 0.679123004
cg00000884 0.853124588
cg00000905 0.066215279
cg00000924 0.690584238
cg00000948 0.806371835

Total number of rows: 485577

Table truncated, full table size 10843 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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