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Sample GSM1572374 Query DataSets for GSM1572374
Status Public on Jun 03, 2015
Title genomic DNA from bone of subject 41
Sample type genomic
Source name Bone
Organism Homo sapiens
Characteristics tissue: bone
subject id: 41
Sex: female
sexpredictedusingdnamethdata: female
age: 78
dna methylation age: 76.0251340764141
Growth protocol DNA extracted from fresh frozen bone
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using AllPrep DNA/RNA mini kit according to standard instructions. Further, we applied phenol–chloroform–isoamyl alcohol as described in Delgado-Calle J et al (2012) Epigenetics 2012; 7: 83–91. Pubmed ID: 23124911.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64490 DNA methylation profiles of human bone samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.31316134
cg00000108 0.937925354
cg00000109 0.821467349
cg00000165 0.16836203
cg00000236 0.65647168
cg00000289 0.545136546
cg00000292 0.845966972
cg00000321 0.232677501
cg00000363 0.333196987
cg00000622 0.017197327
cg00000658 0.822591488
cg00000714 0.14306922
cg00000721 0.922325901
cg00000734 0.059196617
cg00000769 0.029089376
cg00000807 0.844072392
cg00000884 0.860130442
cg00000905 0.081673739
cg00000924 0.656791737
cg00000948 0.872186257

Total number of rows: 485577

Table truncated, full table size 10843 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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