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Sample GSM1572373 Query DataSets for GSM1572373
Status Public on Jun 03, 2015
Title genomic DNA from bone of subject 40
Sample type genomic
Source name Bone
Organism Homo sapiens
Characteristics tissue: bone
subject id: 40
Sex: female
sexpredictedusingdnamethdata: female
age: 72
dna methylation age: 74.8212609611794
Growth protocol DNA extracted from fresh frozen bone
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using AllPrep DNA/RNA mini kit according to standard instructions. Further, we applied phenol–chloroform–isoamyl alcohol as described in Delgado-Calle J et al (2012) Epigenetics 2012; 7: 83–91. Pubmed ID: 23124911.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64490 DNA methylation profiles of human bone samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.253408291
cg00000108 0.900898133
cg00000109 0.783680477
cg00000165 0.150067094
cg00000236 0.784781598
cg00000289 0.494330805
cg00000292 0.452455868
cg00000321 0.294755902
cg00000363 0.256744931
cg00000622 0.022693182
cg00000658 0.813880317
cg00000714 0.101932735
cg00000721 0.921113283
cg00000734 0.061882253
cg00000769 0.027316224
cg00000807 0.756041309
cg00000884 0.893124305
cg00000905 0.070118999
cg00000924 0.666602578
cg00000948 0.867805513

Total number of rows: 485577

Table truncated, full table size 10849 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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