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Sample GSM1572366 Query DataSets for GSM1572366
Status Public on Jun 03, 2015
Title genomic DNA from bone of subject 33
Sample type genomic
Source name Bone
Organism Homo sapiens
Characteristics tissue: bone
subject id: 33
Sex: female
sexpredictedusingdnamethdata: female
age: 77
dna methylation age: 75.3247377110313
Growth protocol DNA extracted from fresh frozen bone
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using AllPrep DNA/RNA mini kit according to standard instructions. Further, we applied phenol–chloroform–isoamyl alcohol as described in Delgado-Calle J et al (2012) Epigenetics 2012; 7: 83–91. Pubmed ID: 23124911.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64490 DNA methylation profiles of human bone samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.367433125
cg00000108 0.882789858
cg00000109 0.823180861
cg00000165 0.143905303
cg00000236 0.753750083
cg00000289 0.526689899
cg00000292 0.735330313
cg00000321 0.296642943
cg00000363 0.434729949
cg00000622 0.01594132
cg00000658 0.806557773
cg00000714 0.131429521
cg00000721 0.890360717
cg00000734 0.057598251
cg00000769 0.034406108
cg00000807 0.673973258
cg00000884 0.854050879
cg00000905 0.055057399
cg00000924 0.621369393
cg00000948 0.746993781

Total number of rows: 485577

Table truncated, full table size 10850 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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