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Sample GSM1572365 Query DataSets for GSM1572365
Status Public on Jun 03, 2015
Title genomic DNA from bone of subject 32
Sample type genomic
Source name Bone
Organism Homo sapiens
Characteristics tissue: bone
subject id: 32
Sex: female
sexpredictedusingdnamethdata: female
age: 76
dna methylation age: 70.9708222727903
Growth protocol DNA extracted from fresh frozen bone
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using AllPrep DNA/RNA mini kit according to standard instructions. Further, we applied phenol–chloroform–isoamyl alcohol as described in Delgado-Calle J et al (2012) Epigenetics 2012; 7: 83–91. Pubmed ID: 23124911.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64490 DNA methylation profiles of human bone samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.348461722
cg00000108 0.902127676
cg00000109 0.790658991
cg00000165 0.080778371
cg00000236 0.777668322
cg00000289 0.54852898
cg00000292 0.520015676
cg00000321 0.326899617
cg00000363 0.173372408
cg00000622 0.018413446
cg00000658 0.818493784
cg00000714 0.103934663
cg00000721 0.936267502
cg00000734 0.052697428
cg00000769 0.028305785
cg00000807 0.803980864
cg00000884 0.856919574
cg00000905 0.049323191
cg00000924 0.704677939
cg00000948 0.885654607

Total number of rows: 485577

Table truncated, full table size 10843 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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