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Sample GSM1572364 Query DataSets for GSM1572364
Status Public on Jun 03, 2015
Title genomic DNA from bone of subject 31
Sample type genomic
Source name Bone
Organism Homo sapiens
Characteristics tissue: bone
subject id: 31
Sex: female
sexpredictedusingdnamethdata: female
age: 81
dna methylation age: 67.7636613100545
Growth protocol DNA extracted from fresh frozen bone
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using AllPrep DNA/RNA mini kit according to standard instructions. Further, we applied phenol–chloroform–isoamyl alcohol as described in Delgado-Calle J et al (2012) Epigenetics 2012; 7: 83–91. Pubmed ID: 23124911.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64490 DNA methylation profiles of human bone samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.233684091
cg00000108 0.923691696
cg00000109 0.829603025
cg00000165 0.174641566
cg00000236 0.725921678
cg00000289 0.543083247
cg00000292 0.596998989
cg00000321 0.350013162
cg00000363 0.35354801
cg00000622 0.008578766
cg00000658 0.814908256
cg00000714 0.086344923
cg00000721 0.947293542
cg00000734 0.055010235
cg00000769 0.041017767
cg00000807 0.814318646
cg00000884 0.873817698
cg00000905 0.088367967
cg00000924 0.682348403
cg00000948 0.907474904

Total number of rows: 485577

Table truncated, full table size 10835 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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