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Sample GSM1572362 Query DataSets for GSM1572362
Status Public on Jun 03, 2015
Title genomic DNA from bone of subject 29
Sample type genomic
Source name Bone
Organism Homo sapiens
Characteristics tissue: bone
subject id: 29
Sex: female
sexpredictedusingdnamethdata: female
age: 104
dna methylation age: 80.4583447260105
Growth protocol DNA extracted from fresh frozen bone
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using AllPrep DNA/RNA mini kit according to standard instructions. Further, we applied phenol–chloroform–isoamyl alcohol as described in Delgado-Calle J et al (2012) Epigenetics 2012; 7: 83–91. Pubmed ID: 23124911.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64490 DNA methylation profiles of human bone samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.347966294
cg00000108 0.944542468
cg00000109 0.833120319
cg00000165 0.174411535
cg00000236 0.715499248
cg00000289 0.494572408
cg00000292 0.782079293
cg00000321 0.31125972
cg00000363 0.35100067
cg00000622 0.023046763
cg00000658 0.916014664
cg00000714 0.123897367
cg00000721 0.963291786
cg00000734 0.050002919
cg00000769 0.031438507
cg00000807 0.850002687
cg00000884 0.875330044
cg00000905 0.104485696
cg00000924 0.710671554
cg00000948 0.876655079

Total number of rows: 485577

Table truncated, full table size 10827 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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