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Sample GSM1572360 Query DataSets for GSM1572360
Status Public on Jun 03, 2015
Title genomic DNA from bone of subject 27
Sample type genomic
Source name Bone
Organism Homo sapiens
Characteristics tissue: bone
subject id: 27
Sex: female
sexpredictedusingdnamethdata: female
age: 79
dna methylation age: 74.3381938596541
Growth protocol DNA extracted from fresh frozen bone
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using AllPrep DNA/RNA mini kit according to standard instructions. Further, we applied phenol–chloroform–isoamyl alcohol as described in Delgado-Calle J et al (2012) Epigenetics 2012; 7: 83–91. Pubmed ID: 23124911.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64490 DNA methylation profiles of human bone samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.251986504
cg00000108 0.886996634
cg00000109 0.758918857
cg00000165 0.170595629
cg00000236 0.732394109
cg00000289 0.571627362
cg00000292 0.483643832
cg00000321 0.29928993
cg00000363 0.25326298
cg00000622 0.011914036
cg00000658 0.81125286
cg00000714 0.103606275
cg00000721 0.926366958
cg00000734 0.058168193
cg00000769 0.042271597
cg00000807 0.790967941
cg00000884 0.860999148
cg00000905 0.072973465
cg00000924 0.689684483
cg00000948 0.897670739

Total number of rows: 485577

Table truncated, full table size 10846 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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