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Sample GSM1572357 Query DataSets for GSM1572357
Status Public on Jun 03, 2015
Title genomic DNA from bone of subject 24
Sample type genomic
Source name Bone
Organism Homo sapiens
Characteristics tissue: bone
subject id: 24
Sex: female
sexpredictedusingdnamethdata: female
age: 76
dna methylation age: 73.8027666488114
Growth protocol DNA extracted from fresh frozen bone
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using AllPrep DNA/RNA mini kit according to standard instructions. Further, we applied phenol–chloroform–isoamyl alcohol as described in Delgado-Calle J et al (2012) Epigenetics 2012; 7: 83–91. Pubmed ID: 23124911.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64490 DNA methylation profiles of human bone samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.389981995
cg00000108 0.928277087
cg00000109 0.796261614
cg00000165 0.101677455
cg00000236 0.845126113
cg00000289 0.42441681
cg00000292 0.606950821
cg00000321 0.366793642
cg00000363 0.291395204
cg00000622 0.01346761
cg00000658 0.847388821
cg00000714 0.130664513
cg00000721 0.913145567
cg00000734 0.064137977
cg00000769 0.031902324
cg00000807 0.756289912
cg00000884 0.837426603
cg00000905 0.076340842
cg00000924 0.641238991
cg00000948 0.839638943

Total number of rows: 485577

Table truncated, full table size 10825 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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