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Sample GSM1572356 Query DataSets for GSM1572356
Status Public on Jun 03, 2015
Title genomic DNA from bone of subject 23
Sample type genomic
Source name Bone
Organism Homo sapiens
Characteristics tissue: bone
subject id: 23
Sex: female
sexpredictedusingdnamethdata: female
age: 73
dna methylation age: 67.761381465804
Growth protocol DNA extracted from fresh frozen bone
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using AllPrep DNA/RNA mini kit according to standard instructions. Further, we applied phenol–chloroform–isoamyl alcohol as described in Delgado-Calle J et al (2012) Epigenetics 2012; 7: 83–91. Pubmed ID: 23124911.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64490 DNA methylation profiles of human bone samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.343024444
cg00000108 0.88940654
cg00000109 0.737721332
cg00000165 0.160259751
cg00000236 0.805171719
cg00000289 0.492830926
cg00000292 0.413214432
cg00000321 0.263516934
cg00000363 0.189542861
cg00000622 0.007585666
cg00000658 0.820487308
cg00000714 0.105475933
cg00000721 0.94367135
cg00000734 0.062555819
cg00000769 0.028703153
cg00000807 0.777673961
cg00000884 0.874987927
cg00000905 0.072463567
cg00000924 0.674599069
cg00000948 0.882053344

Total number of rows: 485577

Table truncated, full table size 10838 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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