GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1572349 Query DataSets for GSM1572349
Status Public on Jun 03, 2015
Title genomic DNA from bone of subject 16
Sample type genomic
Source name Bone
Organism Homo sapiens
Characteristics tissue: bone
subject id: 16
Sex: female
sexpredictedusingdnamethdata: female
age: 73
dna methylation age: 69.5566999438664
Growth protocol DNA extracted from fresh frozen bone
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using AllPrep DNA/RNA mini kit according to standard instructions. Further, we applied phenol–chloroform–isoamyl alcohol as described in Delgado-Calle J et al (2012) Epigenetics 2012; 7: 83–91. Pubmed ID: 23124911.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64490 DNA methylation profiles of human bone samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.398202467
cg00000108 0.923670085
cg00000109 0.753791271
cg00000165 0.138442058
cg00000236 0.746473906
cg00000289 0.555612948
cg00000292 0.66145569
cg00000321 0.388048914
cg00000363 0.228430632
cg00000622 0.021472821
cg00000658 0.79893628
cg00000714 0.114171029
cg00000721 0.931868028
cg00000734 0.074878019
cg00000769 0.02924464
cg00000807 0.711536535
cg00000884 0.846478435
cg00000905 0.053590829
cg00000924 0.626155281
cg00000948 0.803012186

Total number of rows: 485577

Table truncated, full table size 10844 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap