GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1572348 Query DataSets for GSM1572348
Status Public on Jun 03, 2015
Title genomic DNA from bone of subject 15
Sample type genomic
Source name Bone
Organism Homo sapiens
Characteristics tissue: bone
subject id: 15
Sex: male
sexpredictedusingdnamethdata: male
age: 88
dna methylation age: 79.2972133414467
Growth protocol DNA extracted from fresh frozen bone
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using AllPrep DNA/RNA mini kit according to standard instructions. Further, we applied phenol–chloroform–isoamyl alcohol as described in Delgado-Calle J et al (2012) Epigenetics 2012; 7: 83–91. Pubmed ID: 23124911.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64490 DNA methylation profiles of human bone samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.240467796
cg00000108 0.868398925
cg00000109 0.736471298
cg00000165 0.122416584
cg00000236 0.791334216
cg00000289 0.464817902
cg00000292 0.52724605
cg00000321 0.236311171
cg00000363 0.211478412
cg00000622 0.011158838
cg00000658 0.831866033
cg00000714 0.094426912
cg00000721 0.948245925
cg00000734 0.058246232
cg00000769 0.032021958
cg00000807 0.777981464
cg00000884 0.885668569
cg00000905 0.097611194
cg00000924 0.669321477
cg00000948 0.883678084

Total number of rows: 485577

Table truncated, full table size 10843 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap