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Sample GSM1572345 Query DataSets for GSM1572345
Status Public on Jun 03, 2015
Title genomic DNA from bone of subject 12
Sample type genomic
Source name Bone
Organism Homo sapiens
Characteristics tissue: bone
subject id: 12
Sex: female
sexpredictedusingdnamethdata: female
age: 86
dna methylation age: 83.796249191661
Growth protocol DNA extracted from fresh frozen bone
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using AllPrep DNA/RNA mini kit according to standard instructions. Further, we applied phenol–chloroform–isoamyl alcohol as described in Delgado-Calle J et al (2012) Epigenetics 2012; 7: 83–91. Pubmed ID: 23124911.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64490 DNA methylation profiles of human bone samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.340829924
cg00000108 0.923751889
cg00000109 0.921105357
cg00000165 0.135250368
cg00000236 0.809136192
cg00000289 0.610201606
cg00000292 0.524911563
cg00000321 0.33514875
cg00000363 0.284983554
cg00000622 0.004287885
cg00000658 0.869503241
cg00000714 0.13875877
cg00000721 0.970685871
cg00000734 0.052162727
cg00000769 0.018839783
cg00000807 0.769102319
cg00000884 0.895768572
cg00000905 0.055648635
cg00000924 0.669593358
cg00000948 0.884567652

Total number of rows: 485577

Table truncated, full table size 10721 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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