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Sample GSM1572344 Query DataSets for GSM1572344
Status Public on Jun 03, 2015
Title genomic DNA from bone of subject 11
Sample type genomic
Source name Bone
Organism Homo sapiens
Characteristics tissue: bone
subject id: 11
Sex: female
sexpredictedusingdnamethdata: female
age: 77
dna methylation age: 73.3652982244359
Growth protocol DNA extracted from fresh frozen bone
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using AllPrep DNA/RNA mini kit according to standard instructions. Further, we applied phenol–chloroform–isoamyl alcohol as described in Delgado-Calle J et al (2012) Epigenetics 2012; 7: 83–91. Pubmed ID: 23124911.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64490 DNA methylation profiles of human bone samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.465588025
cg00000108 0.949230421
cg00000109 0.812403641
cg00000165 0.163009069
cg00000236 0.820383425
cg00000289 0.576260557
cg00000292 0.811470845
cg00000321 0.278503537
cg00000363 0.332465604
cg00000622 0
cg00000658 0.822486483
cg00000714 0.151258569
cg00000721 0.924286827
cg00000734 0.06303124
cg00000769 0.0184951
cg00000807 0.766668029
cg00000884 0.880089032
cg00000905 0.034505374
cg00000924 0.676237134
cg00000948 0.773904288

Total number of rows: 485577

Table truncated, full table size 10701 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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