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Sample GSM1572340 Query DataSets for GSM1572340
Status Public on Jun 03, 2015
Title genomic DNA from bone of subject 7
Sample type genomic
Source name Bone
Organism Homo sapiens
Characteristics tissue: bone
subject id: 7
Sex: female
sexpredictedusingdnamethdata: female
age: 100
dna methylation age: 81.9933350964599
Growth protocol DNA extracted from fresh frozen bone
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using AllPrep DNA/RNA mini kit according to standard instructions. Further, we applied phenol–chloroform–isoamyl alcohol as described in Delgado-Calle J et al (2012) Epigenetics 2012; 7: 83–91. Pubmed ID: 23124911.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64490 DNA methylation profiles of human bone samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.313101831
cg00000108 0.95270948
cg00000109 0.769374077
cg00000165 0.122432139
cg00000236 0.774754152
cg00000289 0.443079251
cg00000292 0.634626696
cg00000321 0.323208871
cg00000363 0.443582257
cg00000622 0.008851796
cg00000658 0.815940057
cg00000714 0.124633876
cg00000721 0.974082747
cg00000734 0.077673099
cg00000769 0.018171926
cg00000807 0.767631789
cg00000884 0.841010217
cg00000905 0.039196977
cg00000924 0.694218783
cg00000948 0.80051356

Total number of rows: 485577

Table truncated, full table size 10797 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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