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Sample GSM1572339 Query DataSets for GSM1572339
Status Public on Jun 03, 2015
Title genomic DNA from bone of subject 6
Sample type genomic
Source name Bone
Organism Homo sapiens
Characteristics tissue: bone
subject id: 6
Sex: female
sexpredictedusingdnamethdata: female
age: 84
dna methylation age: 77.9380788999746
Growth protocol DNA extracted from fresh frozen bone
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using AllPrep DNA/RNA mini kit according to standard instructions. Further, we applied phenol–chloroform–isoamyl alcohol as described in Delgado-Calle J et al (2012) Epigenetics 2012; 7: 83–91. Pubmed ID: 23124911.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64490 DNA methylation profiles of human bone samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.233604736
cg00000108 0.931441495
cg00000109 0.819354008
cg00000165 0.16209475
cg00000236 0.789664092
cg00000289 0.50778171
cg00000292 0.509284316
cg00000321 0.299518227
cg00000363 0.292861516
cg00000622 0.002834467
cg00000658 0.822345184
cg00000714 0.114360342
cg00000721 0.943991529
cg00000734 0.069394994
cg00000769 0.022203761
cg00000807 0.718602049
cg00000884 0.909206337
cg00000905 0.086016248
cg00000924 0.696268042
cg00000948 0.873631497

Total number of rows: 485577

Table truncated, full table size 10805 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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