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Sample GSM1572338 Query DataSets for GSM1572338
Status Public on Jun 03, 2015
Title genomic DNA from bone of subject 5
Sample type genomic
Source name Bone
Organism Homo sapiens
Characteristics tissue: bone
subject id: 5
Sex: female
sexpredictedusingdnamethdata: female
age: 82
dna methylation age: 78.9466357534852
Growth protocol DNA extracted from fresh frozen bone
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using AllPrep DNA/RNA mini kit according to standard instructions. Further, we applied phenol–chloroform–isoamyl alcohol as described in Delgado-Calle J et al (2012) Epigenetics 2012; 7: 83–91. Pubmed ID: 23124911.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64490 DNA methylation profiles of human bone samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.238674361
cg00000108 0.930264105
cg00000109 0.766428962
cg00000165 0.12869731
cg00000236 0.850031119
cg00000289 0.484462228
cg00000292 0.457287264
cg00000321 0.417407589
cg00000363 0.131728582
cg00000622 0.011939559
cg00000658 0.837672707
cg00000714 0.091509333
cg00000721 0.967806158
cg00000734 0.059186928
cg00000769 0.027574069
cg00000807 0.77537922
cg00000884 0.934310573
cg00000905 0.083756843
cg00000924 0.693937144
cg00000948 0.885419322

Total number of rows: 485577

Table truncated, full table size 10773 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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