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Sample GSM1572336 Query DataSets for GSM1572336
Status Public on Jun 03, 2015
Title genomic DNA from bone of subject 3
Sample type genomic
Source name Bone
Organism Homo sapiens
Characteristics tissue: bone
subject id: 3
Sex: female
sexpredictedusingdnamethdata: female
age: 70
dna methylation age: 69.4277626412685
Growth protocol DNA extracted from fresh frozen bone
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using AllPrep DNA/RNA mini kit according to standard instructions. Further, we applied phenol–chloroform–isoamyl alcohol as described in Delgado-Calle J et al (2012) Epigenetics 2012; 7: 83–91. Pubmed ID: 23124911.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64490 DNA methylation profiles of human bone samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.517652332
cg00000108 0.939678097
cg00000109 0.821311292
cg00000165 0.196735142
cg00000236 0.773389918
cg00000289 0.507390132
cg00000292 0.773754928
cg00000321 0.323970464
cg00000363 0.358990207
cg00000622 0.005055728
cg00000658 0.807630474
cg00000714 0.135958369
cg00000721 0.891043864
cg00000734 0.056655697
cg00000769 0.027816533
cg00000807 0.74774458
cg00000884 0.81300037
cg00000905 0.050971633
cg00000924 0.694050366
cg00000948 0.798480519

Total number of rows: 485577

Table truncated, full table size 10819 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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