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Sample GSM1572335 Query DataSets for GSM1572335
Status Public on Jun 03, 2015
Title genomic DNA from bone of subject 2
Sample type genomic
Source name Bone
Organism Homo sapiens
Characteristics tissue: bone
subject id: 2
Sex: male
sexpredictedusingdnamethdata: male
age: 75
dna methylation age: 73.3091431007112
Growth protocol DNA extracted from fresh frozen bone
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from fresh frozen tissue using AllPrep DNA/RNA mini kit according to standard instructions. Further, we applied phenol–chloroform–isoamyl alcohol as described in Delgado-Calle J et al (2012) Epigenetics 2012; 7: 83–91. Pubmed ID: 23124911.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
Submission date Dec 23, 2014
Last update date Jun 03, 2015
Contact name Steve Horvath
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
Platform ID GPL13534
Series (2)
GSE64490 DNA methylation profiles of human bone samples
GSE64511 DNA methylation profiles of multiple human tissues

Data table header descriptions
VALUE Background corrected beta values resulting from BeadStudio

Data table
cg00000029 0.425861531
cg00000108 0.926428632
cg00000109 0.879627018
cg00000165 0.297519708
cg00000236 0.812056184
cg00000289 0.66185907
cg00000292 0.710669117
cg00000321 0.291451442
cg00000363 0.260014499
cg00000622 0.01096315
cg00000658 0.827418174
cg00000714 0.15452799
cg00000721 0.963453037
cg00000734 0.065427265
cg00000769 0.035786943
cg00000807 0.782316974
cg00000884 0.860706891
cg00000905 0.050532058
cg00000924 0.661942743
cg00000948 0.817592232

Total number of rows: 485577

Table truncated, full table size 10777 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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