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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Mar 24, 2015 |
| Title |
H3K4me1 ChIPseq - homo2 |
| Sample type |
SRA |
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| Source name |
E14.5 Liver
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| Organism |
Mus musculus |
| Characteristics |
strain: FVB
tissue: Liver
developmental stage: E14.5
genotype/variation: Rlf homozygous mutant
gender: Male
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| Extracted molecule |
genomic DNA |
| Extraction protocol |
Single end
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| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina NextSeq 500 |
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| Data processing |
Libraries were subsampled to equal read counts and mapped with BWA using default paramaters.
Genome_build: mm9
Supplementary_files_format_and_content: Wiggle plot showing density of mapped ChIP-seq reads in 32 bp windows
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| Submission date |
Dec 18, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
Harald Oey |
| Organization name |
La Trobe University
|
| Department |
Genetics
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| Street address |
Kingsbury Drive
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| City |
Bundoora |
| State/province |
Vic |
| ZIP/Postal code |
3086 |
| Country |
Australia |
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| Platform ID |
GPL19057 |
| Series (1) |
| GSE58108 |
Rlf, a widely-spaced zinc finger protein, is involved in maintaining epigenetic marks at CpG island shores and enhancer elements across the genome |
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| Relations |
| BioSample |
SAMN03268476 |
| SRA |
SRX835932 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM1568495_Rlf_Homo2_H3K4me1_uniqnorm_signal.bw |
105.0 Mb |
(ftp)(http) |
BW |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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