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Sample GSM1567902 Query DataSets for GSM1567902
Status Public on Mar 01, 2015
Title Gene expression mock transfection BioRep2_chip
Sample type RNA
 
Source name HeLa cell_mock transfection
Organism Homo sapiens
Characteristics cell line: HeLa
Treatment protocol mature miR-191 duplex or mock transfection (lipofectamine 2000 alone) was transfected with lipofectamine 2000 at a concentration of 100nM in the well
Growth protocol DMEM supplemented with 10% FBS
Extracted molecule total RNA
Extraction protocol Total RNA was isolated with TRIzol
Label Cy3
Label protocol Standard Illumina TotalPrep RNA Amplification Kit protocol
 
Hybridization protocol Standard Illumina TotalPrep RNA Amplification Kit protocol
Scan protocol Standard Illumina scanning protocol
Description Total RNA isolated 24 hours after mock transfection (lipofectamine 2000 alone)
SAMPLE 4
Data processing Quantile normalized using Illumina BeadStudio
 
Submission date Dec 17, 2014
Last update date Mar 01, 2015
Contact name Vishy Iyer
E-mail(s) iyerlab@gmail.com
Phone 5122327833
Organization name University of Texas at Austin
Department Molecular Biosciences
Street address 2500 Speedway Dr. MBB 3.212
City Austin
State/province TX
ZIP/Postal code 78712
Country USA
 
Platform ID GPL10558
Series (2)
GSE63483 Genome-wide hsa-miR-191 target profile [chip]
GSE63556 Genome wide miR-191 target profile determined by RIP and gene expression profiling

Data table header descriptions
ID_REF
VALUE Quantile normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 110.5749 0.6090909
ILMN_2055271 138.3535 0.05974026
ILMN_1736007 117.1706 0.4428571
ILMN_2383229 121.5567 0.3272727
ILMN_1806310 122.3924 0.3090909
ILMN_1779670 108.3948 0.674026
ILMN_1653355 129.8433 0.1571429
ILMN_1717783 88.17516 0.9909091
ILMN_1705025 117.847 0.425974
ILMN_1814316 124.5268 0.2688312
ILMN_2359168 91.08928 0.9844156
ILMN_1731507 93.47449 0.9623377
ILMN_1787689 103.5755 0.7909091
ILMN_3241953 125.7564 0.2519481
ILMN_1745607 101.2043 0.8363636
ILMN_2136495 96.76269 0.9077922
ILMN_1668111 119.1929 0.3896104
ILMN_2295559 132.4482 0.1311688
ILMN_1735045 141.6084 0.04415584
ILMN_1680754 122.3805 0.3090909

Total number of rows: 47323

Table truncated, full table size 1387 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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