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Sample GSM1567899 Query DataSets for GSM1567899
Status Public on Mar 01, 2015
Title Gene expression miR-191 BioRep1_chip
Sample type RNA
 
Source name HeLa cell_transfected with miR-191 duplex
Organism Homo sapiens
Characteristics cell line: HeLa
Treatment protocol mature miR-191 duplex or mock transfection (lipofectamine 2000 alone) was transfected with lipofectamine 2000 at a concentration of 100nM in the well
Growth protocol DMEM supplemented with 10% FBS
Extracted molecule total RNA
Extraction protocol Total RNA was isolated with TRIzol
Label Cy3
Label protocol Standard Illumina TotalPrep RNA Amplification Kit protocol
 
Hybridization protocol Standard Illumina TotalPrep RNA Amplification Kit protocol
Scan protocol Standard Illumina scanning protocol
Description Total RNA isolated 24 hours after transfection of miR-191 mature duplexes
SAMPLE 1
Data processing Quantile normalized using Illumina BeadStudio
 
Submission date Dec 17, 2014
Last update date Mar 01, 2015
Contact name Vishy Iyer
E-mail(s) iyerlab@gmail.com
Phone 5122327833
Organization name University of Texas at Austin
Department Molecular Biosciences
Street address 2500 Speedway Dr. MBB 3.212
City Austin
State/province TX
ZIP/Postal code 78712
Country USA
 
Platform ID GPL10558
Series (2)
GSE63483 Genome-wide hsa-miR-191 target profile [chip]
GSE63556 Genome wide miR-191 target profile determined by RIP and gene expression profiling

Data table header descriptions
ID_REF
VALUE Quantile normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 125.2291 0.2350649
ILMN_2055271 187.0749 0
ILMN_1736007 118.3647 0.412987
ILMN_2383229 128.7591 0.1688312
ILMN_1806310 121.2502 0.3467532
ILMN_1779670 101.013 0.8233766
ILMN_1653355 145.9542 0.02337662
ILMN_1717783 100.8894 0.8233766
ILMN_1705025 134.3408 0.08441558
ILMN_1814316 130.0542 0.1506494
ILMN_2359168 98.7659 0.8623376
ILMN_1731507 100.42 0.8272727
ILMN_1787689 113.1222 0.5337662
ILMN_3241953 109.9657 0.6194805
ILMN_1745607 96.15446 0.9194805
ILMN_2136495 97.58413 0.8818182
ILMN_1668111 125.9256 0.2194805
ILMN_2295559 124.1084 0.2623377
ILMN_1735045 132.2802 0.1155844
ILMN_1680754 106.5822 0.7012987

Total number of rows: 47323

Table truncated, full table size 1381 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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