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Sample GSM156768 Query DataSets for GSM156768
Status Public on Mar 01, 2007
Title HELA cells stimulated with EGF for 120 minutes
Sample type RNA
Source name Human cervical carcinoma cell line
Organism Homo sapiens
Characteristics HeLa cells
Treatment protocol HELA cells were grown in DMEM supplemented with 10% FCS and antibiotics. Cells were serum deprived for 24 hours. Following stimulation with 10 ng/ml EGF for 120 minutes.
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U!33A. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using laser confocal scanner.
Description Gene expression data from unstimulated HELA cells.
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 150.
Submission date Jan 18, 2007
Last update date Mar 01, 2007
Contact name Tal Shay
Organization name Weizmann Institute of Science
Department Physics of Complex Systems
Street address Herzel
City Rehovot
ZIP/Postal code 26100
Country Israel
Platform ID GPL96
Series (2)
GSE6783 Expression data from HELA cells subject to EGF stimulation
GSE6786 HeLa cells and MCF10A cells subject to EGF stimulation

Data table header descriptions
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
AFFX-BioB-5_at 152.5 P
AFFX-BioB-M_at 306.4 P
AFFX-BioB-3_at 193.3 P
AFFX-BioC-5_at 512.8 P
AFFX-BioC-3_at 326.3 P
AFFX-BioDn-5_at 385 P
AFFX-BioDn-3_at 2608.4 P
AFFX-CreX-5_at 3873.9 P
AFFX-CreX-3_at 6218 P
AFFX-DapX-5_at 2.7 A
AFFX-DapX-M_at 16.7 A
AFFX-DapX-3_at 1.7 A
AFFX-LysX-5_at 13.1 A
AFFX-LysX-M_at 30.2 A
AFFX-LysX-3_at 8.4 A
AFFX-PheX-5_at 2.3 A
AFFX-PheX-M_at 2.8 A
AFFX-PheX-3_at 9.3 A
AFFX-ThrX-5_at 14 A
AFFX-ThrX-M_at 3.8 A

Total number of rows: 22283

Table truncated, full table size 389 Kbytes.

Supplementary file Size Download File type/resource
GSM156768.CEL.gz 3.4 Mb (ftp)(http) CEL

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