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Sample GSM1550641 Query DataSets for GSM1550641
Status Public on Mar 01, 2015
Title Ago2 IP miR-191 BioRep1_chip
Sample type RNA
Source name HeLa cell_transfected with miR-191 duplex
Organism Homo sapiens
Characteristics cell line: HeLa
antibody: Ago2 (Abcam ab57113)
Treatment protocol mature miR-191 duplex at a concentration of 100nM was transfected with lipofectamine 2000
Growth protocol DMEM supplemented with 10% FBS
Extracted molecule total RNA
Extraction protocol RNA was extracted with TRIzol reagent
Label Cy3
Label protocol Standard Illumina TotalPrep RNA Amplification Kit protocol
Hybridization protocol Standard Illumina TotalPrep RNA Amplification Kit protocol
Scan protocol Standard Illumina scanning protocol
Description RNA isolated from Ago2 immunoprecipitation
Data processing Quantile normalized using Illumina BeadStudio
Submission date Nov 19, 2014
Last update date Mar 01, 2015
Contact name Vishy Iyer
Phone 5122327833
Organization name University of Texas at Austin
Department Molecular Biosciences
Street address 2500 Speedway Dr. MBB 3.212
City Austin
State/province TX
ZIP/Postal code 78712
Country USA
Platform ID GPL10558
Series (2)
GSE63483 Genome-wide hsa-miR-191 target profile [chip]
GSE63556 Genome wide miR-191 target profile determined by RIP and gene expression profiling

Data table header descriptions
VALUE Quantile normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 125.2775 0.3792208
ILMN_2055271 131.5374 0.2285714
ILMN_1736007 113.6614 0.7558442
ILMN_2383229 131.7751 0.2233766
ILMN_1806310 111.8772 0.7948052
ILMN_1779670 117.3465 0.638961
ILMN_1653355 144.3603 0.06753246
ILMN_1717783 104.8316 0.938961
ILMN_1705025 147.2709 0.05844156
ILMN_1814316 115.5504 0.7
ILMN_2359168 123.2824 0.4467532
ILMN_1731507 116.312 0.6753247
ILMN_1787689 129.228 0.2883117
ILMN_3241953 142.065 0.08831169
ILMN_1745607 108.8327 0.8571429
ILMN_2136495 114.2726 0.7402598
ILMN_1668111 118.2168 0.6012987
ILMN_2295559 125.8394 0.3636364
ILMN_1735045 373.659 0
ILMN_1680754 130.9523 0.2467532

Total number of rows: 47231

Table truncated, full table size 1386 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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