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Sample GSM1545686 Query DataSets for GSM1545686
Status Public on Apr 02, 2015
Title Epidermis_psoriasis_PRE-UV_7
Sample type genomic
Source name psoriatic epidermis before phototherapy patient 7
Organism Homo sapiens
Characteristics gender: Female
treatment: PRE-UV
tissue: psoriatic epidermis before phototherapy
Treatment protocol Skin biopsies were incubated in 3.8% ammonium thiocyanate at room temperature for 20 min for separation of epidermis from dermis
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated from epidermis using PureLink® Genomic DNA Kits from Life Technologies
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium HumanMethylation450 BeadChip using standard Illumina protocol
Scan protocol iScan Reader was used to image BeadChips
Description psoriasis
Data processing ChAMP pipeline (probe filtering, BMIQ normalization)
Submission date Nov 14, 2014
Last update date Apr 02, 2015
Contact name Xiaolian Gu
Organization name Umeå University
Department Medical Biosciences
Lab Pathology
Street address Building 6M, 2nd floor, Umeå University
City Umeå
State/province västerbotton
ZIP/Postal code 90187
Country Sweden
Platform ID GPL13534
Series (1)
GSE63315 Narrow-band UVB phototherapy reverses DNA methylation changes in psoriatic epidermis

Data table header descriptions
VALUE beta-value produced following ChAMP pipeline
Detection Pval

Data table
ID_REF VALUE Detection Pval
cg00000029 0.100580994 0
cg00000108 0.969673513 0
cg00000109 0.887241395 0
cg00000165 0.182746614 0
cg00000236 0.912069569 0
cg00000289 0.685283983 0
cg00000292 0.504419047 0
cg00000321 0.384939321 0
cg00000363 0.133174669 0
cg00000622 0.031381837 0
cg00000658 0.847279796 0
cg00000714 0.079610048 0
cg00000721 0.952114428 0
cg00000734 0.073547312 0
cg00000769 0.0684763 0
cg00000807 0.92252808 0
cg00000884 0.847467199 0
cg00000905 0.093838243 0
cg00000924 0.52295722 0
cg00000948 0.920478015 0

Total number of rows: 470903

Table truncated, full table size 11456 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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