NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1533075 Query DataSets for GSM1533075
Status Public on Nov 01, 2014
Title g yhet m9
Sample type SRA
 
Source name Choroid plexus of young heterochronic parabiont 9
Organism Mus musculus
Characteristics strain: C57BL/6
selection marker: age and type of parabiosis (hetero- vs. isochronic)
organ: Choroid plexus
age: 3 months
treatment: heterochonic parabiosis
tissue isolation: excised from PBS-perfused mouse and snap frozen on dry ice
Extracted molecule total RNA
Extraction protocol RNA MicroPrep kit
http://www.sciencemag.org/content/343/6172/776.abstract?ijkey=6c89f9e625c6efc35902e948462a6d1dad095f64&keytype2=tf_ipsecsha
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 1500
 
Description processed data in Series supplementary file parabiosis.txt
Data processing Illumina Casava1.8 software used for basecalling.
alignment: tophat with deafult parameters
Expression table done using ESAT http://garberlab.umassmed.edu/software/esat/
Genome_build: mm9
Supplementary_files_format_and_content: tab-delimited text files include mRNA molecule count values for each Sample
 
Submission date Oct 28, 2014
Last update date May 15, 2019
Contact name Ido Amit
E-mail(s) ido.amit@weizmann.ac.il
Phone 972-8-9343338
Organization name Weizmann Institute of Science
Department Immunology
Street address 234 Herzl st.
City Rehovot
ZIP/Postal code 760001
Country Israel
 
Platform ID GPL18480
Series (1)
GSE62762 Aging-induced type I interferon response at the choroid plexus negatively affects brain function.
Relations
BioSample SAMN03145089
SRA SRX745010

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap