|
Status |
Public on Nov 01, 2014 |
Title |
MD O2 WT Colon |
Sample type |
SRA |
|
|
Source name |
colon of aged mouse 2
|
Organism |
Mus musculus |
Characteristics |
strain: C57BL/6 selection marker: age and organ organ: colon age: 22 months treatment: none tissue isolation: excised from PBS-perfused mouse and snap frozen on dry ice
|
Extracted molecule |
total RNA |
Extraction protocol |
miRNeasy (Qiagen) http://www.sciencemag.org/content/343/6172/776.abstract?ijkey=6c89f9e625c6efc35902e948462a6d1dad095f64&keytype2=tf_ipsecsha
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina HiSeq 1500 |
|
|
Description |
processed data in Series supplementary file Y_vs_O_tissues_o.txt
|
Data processing |
Illumina Casava1.8 software used for basecalling. alignment: tophat with deafult parameters Expression table done using ESAT http://garberlab.umassmed.edu/software/esat/ Genome_build: mm9 Supplementary_files_format_and_content: tab-delimited text files include mRNA molecule count values for each Sample
|
|
|
Submission date |
Oct 28, 2014 |
Last update date |
May 15, 2019 |
Contact name |
Ido Amit |
E-mail(s) |
ido.amit@weizmann.ac.il
|
Phone |
972-8-9343338
|
Organization name |
Weizmann Institute of Science
|
Department |
Immunology
|
Street address |
234 Herzl st.
|
City |
Rehovot |
ZIP/Postal code |
760001 |
Country |
Israel |
|
|
Platform ID |
GPL18480 |
Series (1) |
GSE62762 |
Aging-induced type I interferon response at the choroid plexus negatively affects brain function. |
|
Relations |
BioSample |
SAMN03145113 |
SRA |
SRX744950 |