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Sample GSM1533006 Query DataSets for GSM1533006
Status Public on Nov 01, 2014
Title MD O2 WT BM
Sample type SRA
 
Source name bone marrow of aged mouse 2
Organism Mus musculus
Characteristics strain: C57BL/6
selection marker: age and organ
organ: bone marrow
age: 22 months
treatment: none
tissue isolation: bone marrow was flushed with PBS from tibia and femur from PBS-perfused mouse and snap-frozen on dry ice
Extracted molecule total RNA
Extraction protocol miRNeasy (Qiagen)
http://www.sciencemag.org/content/343/6172/776.abstract?ijkey=6c89f9e625c6efc35902e948462a6d1dad095f64&keytype2=tf_ipsecsha
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 1500
 
Description processed data in Series supplementary file Y_vs_O_tissues_o.txt
Data processing Illumina Casava1.8 software used for basecalling.
alignment: tophat with deafult parameters
Expression table done using ESAT http://garberlab.umassmed.edu/software/esat/
Genome_build: mm9
Supplementary_files_format_and_content: tab-delimited text files include mRNA molecule count values for each Sample
 
Submission date Oct 28, 2014
Last update date May 15, 2019
Contact name Ido Amit
E-mail(s) ido.amit@weizmann.ac.il
Phone 972-8-9343338
Organization name Weizmann Institute of Science
Department Immunology
Street address 234 Herzl st.
City Rehovot
ZIP/Postal code 760001
Country Israel
 
Platform ID GPL18480
Series (1)
GSE62762 Aging-induced type I interferon response at the choroid plexus negatively affects brain function.
Relations
BioSample SAMN03145130
SRA SRX744941

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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