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Sample GSM1531603 Query DataSets for GSM1531603
Status Public on Dec 03, 2014
Title Sample_MD_A9_mon_pre16a
Sample type SRA
Source name Bone marrow derived macrophages treated with TGFb1
Organism Mus musculus
Characteristics strain: C57BL/6
organ: bone marrow culture
selection marker: Time following TGFb1 treatment
treatment: TGFb1 treatment
time: 16 hr
Treatment protocol TGFb1 (100ng/ml) was added to the cells
Growth protocol M-CSF suppplemented culture
Extracted molecule total RNA
Extraction protocol miRNeasy (Qiagen)
see Jaitin et. al., Science 2014
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 1500
Description TGFB_RAW.xlsx
Data processing Illumina Casava1.8 software used for basecalling.
alignment: tophat with deafult parameters
Expression table done using ESAT
Genome_build: mm9
Supplementary_files_format_and_content: tab-delimited text files include mRNA molecule count values for each Sample
Submission date Oct 24, 2014
Last update date May 15, 2019
Contact name Ido Amit
Phone 972-8-9343338
Organization name Weizmann Institute of Science
Department Immunology
Street address 234 Herzl st.
City Rehovot
ZIP/Postal code 760001
Country Israel
Platform ID GPL18480
Series (1)
GSE62698 Spinal cord injury (RNA sequencing data)
BioSample SAMN03142857
SRA SRX742762

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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