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Sample GSM1531593 Query DataSets for GSM1531593
Status Public on Dec 03, 2014
Title Sample_MD_A10_mon_pre16b
Sample type SRA
 
Source name Bone marrow derived macrophages treated with TGFb1
Organism Mus musculus
Characteristics strain: C57BL/6
organ: bone marrow culture
selection marker: Time following TGFb1 treatment
treatment: TGFb1 treatment
time: 16 hr
Treatment protocol TGFb1 (100ng/ml) was added to the cells
Growth protocol M-CSF suppplemented culture
Extracted molecule total RNA
Extraction protocol miRNeasy (Qiagen)
see Jaitin et. al., Science 2014
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 1500
 
Description TGFB_RAW.xlsx
Data processing Illumina Casava1.8 software used for basecalling.
alignment: tophat with deafult parameters
Expression table done using ESAT http://garberlab.umassmed.edu/software/esat/
Genome_build: mm9
Supplementary_files_format_and_content: tab-delimited text files include mRNA molecule count values for each Sample
 
Submission date Oct 24, 2014
Last update date May 15, 2019
Contact name Ido Amit
E-mail(s) ido.amit@weizmann.ac.il
Phone 972-8-9343338
Organization name Weizmann Institute of Science
Department Immunology
Street address 234 Herzl st.
City Rehovot
ZIP/Postal code 760001
Country Israel
 
Platform ID GPL18480
Series (1)
GSE62698 Spinal cord injury (RNA sequencing data)
Relations
BioSample SAMN03142861
SRA SRX742752

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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