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Sample GSM1525501 Query DataSets for GSM1525501
Status Public on Jan 01, 2016
Title genomic DNA from control (NPC_N17)
Sample type genomic
Source name NP non-tumor tissue
Organism Homo sapiens
Characteristics disease status: Nasopharyngeal Carcinoma
tissue: normal (non-tumor tissue)
sample name: N17
Treatment protocol Genomic DNA was bisulphite converted using EZ-96 DNA Methylation Kit (Zymo Research)
Extracted molecule genomic DNA
Extraction protocol All specimens were extracted using AllPrep DNA/RNA Micro Kit (Qiagen). The quality and quantity of the DNA samples was measured by NanoDrop and Qubit
Label Cy5 and Cy3
Label protocol Standard Illumina protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description Sample name: NPC_N17
Normal NP sample
Data processing BeadStudio software v3.2
Submission date Oct 15, 2014
Last update date Jan 01, 2016
Contact name Maria Li Lung
Phone +852 39179783
Organization name The University of Hong Kong
Department Clinical Oncology
Street address 21 Sassoon Road
City Hong Kong
ZIP/Postal code NA
Country Hong Kong
Platform ID GPL13534
Series (1)
GSE62336 Methylome study in Nasopharyngeal Carcinoma (NPC)

Data table header descriptions
VALUE Normalized average beta value using BeadStudio software following Illumina Instruction

Data table
cg00000029 0.5464954 0
cg00000108 0.8914471 0
cg00000109 0.7913882 0
cg00000165 0.3069536 0
cg00000236 0.8157306 0
cg00000289 0.6663373 0
cg00000292 0.7421299 0
cg00000321 0.3592292 0
cg00000363 0.3587283 0
cg00000622 0.02365407 0
cg00000658 0.7980655 0
cg00000714 0.1773989 0
cg00000721 0.8901848 0
cg00000734 0.06770662 0
cg00000769 0.06759942 0
cg00000807 0.7471907 0
cg00000884 0.780592 0
cg00000905 0.1222613 0
cg00000924 0.469897 0
cg00000948 0.8106186 0

Total number of rows: 485577

Table truncated, full table size 10953 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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