|
| Status |
Public on Jan 01, 2016 |
| Title |
genomic DNA from NPC (NPC_T12) |
| Sample type |
genomic |
| |
|
| Source name |
NPC tumor tissue
|
| Organism |
Homo sapiens |
| Characteristics |
disease status: Nasopharyngeal Carcinoma
tissue: tumor
sample name: T12
|
| Treatment protocol |
Genomic DNA was bisulphite converted using EZ-96 DNA Methylation Kit (Zymo Research)
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
All specimens were extracted using AllPrep DNA/RNA Micro Kit (Qiagen). The quality and quantity of the DNA samples was measured by NanoDrop and Qubit
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina protocol
|
| |
|
| Hybridization protocol |
Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
| Description |
Sample name: NPC_T12
NPC tumor sample
|
| Data processing |
BeadStudio software v3.2
|
| |
|
| Submission date |
Oct 15, 2014 |
| Last update date |
Jan 01, 2016 |
| Contact name |
Maria Li Lung |
| E-mail(s) |
mlilung@hku.hk
|
| Phone |
+852 39179783
|
| Organization name |
The University of Hong Kong
|
| Department |
Clinical Oncology
|
| Street address |
21 Sassoon Road
|
| City |
Hong Kong |
| ZIP/Postal code |
NA |
| Country |
Hong Kong |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE62336 |
Methylome study in Nasopharyngeal Carcinoma (NPC) |
|
