|
Status |
Public on Jan 01, 2016 |
Title |
genomic DNA from NPC (NPC_T2) |
Sample type |
genomic |
|
|
Source name |
NPC tumor tissue
|
Organism |
Homo sapiens |
Characteristics |
disease status: Nasopharyngeal Carcinoma tissue: tumor sample name: T2
|
Treatment protocol |
Genomic DNA was bisulphite converted using EZ-96 DNA Methylation Kit (Zymo Research)
|
Extracted molecule |
genomic DNA |
Extraction protocol |
All specimens were extracted using AllPrep DNA/RNA Micro Kit (Qiagen). The quality and quantity of the DNA samples was measured by NanoDrop and Qubit
|
Label |
Cy5 and Cy3
|
Label protocol |
Standard Illumina protocol
|
|
|
Hybridization protocol |
Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
|
Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
Description |
Sample name: NPC_T2 NPC tumor sample
|
Data processing |
BeadStudio software v3.2
|
|
|
Submission date |
Oct 15, 2014 |
Last update date |
Jan 01, 2016 |
Contact name |
Maria Li Lung |
E-mail(s) |
mlilung@hku.hk
|
Phone |
+852 39179783
|
Organization name |
The University of Hong Kong
|
Department |
Clinical Oncology
|
Street address |
21 Sassoon Road
|
City |
Hong Kong |
ZIP/Postal code |
NA |
Country |
Hong Kong |
|
|
Platform ID |
GPL13534 |
Series (1) |
GSE62336 |
Methylome study in Nasopharyngeal Carcinoma (NPC) |
|