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Sample GSM1525017 Query DataSets for GSM1525017
Status Public on Oct 07, 2015
Title Primary AML patient 919
Sample type genomic
Source name Primary AML patient
Organism Homo sapiens
Characteristics tissue: blood
dnmt3a mutation status: Wildtype
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3/Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2. Unmethylated and methylated signal intensities included in signals_AML.txt file.
Submission date Oct 14, 2014
Last update date Oct 07, 2015
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (2)
GSE62298 Genome-scale profiling of the DNA methylation landscape in human AML patients
GSE62303 DNA methylation landscape in AML

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0 0.861410774
cg00212031 0 0.915273362
cg00213748 0 0.936226844
cg00214611 0 0.991761828
cg00455876 0.068801158 0.03136539
cg01707559 0.236003919 0
cg02004872 0.0532414 0
cg02011394 0.011944916 0.828761725
cg02050847 0 0.998265466
cg02233190 0.041337173 0.02010544
cg02494853 0.019074746 0
cg02839557 0 0.99924461
cg02842889 0 0.985813675
cg03052502 0 0.986902932
cg03155755 0.055749905 0.847135897
cg03244189 0.126534578 0
cg03443143 0.22091043 0.945066688
cg03683899 0 0.993303282
cg03695421 0.008954992 0.00017905
cg03706273 0.015556942 0

Total number of rows: 485512

Table truncated, full table size 11762 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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