GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1524984 Query DataSets for GSM1524984
Status Public on Oct 07, 2015
Title Primary AML patient 1449
Sample type genomic
Source name Primary AML patient
Organism Homo sapiens
Characteristics tissue: blood
dnmt3a mutation status: Wildtype
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3/Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2. Unmethylated and methylated signal intensities included in signals_AML.txt file.
Submission date Oct 14, 2014
Last update date Oct 07, 2015
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (2)
GSE62298 Genome-scale profiling of the DNA methylation landscape in human AML patients
GSE62303 DNA methylation landscape in AML

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.459360969 0.455247131
cg00212031 0.060419728 0.538381011
cg00213748 0.318070518 0.175813102
cg00214611 0.175427697 0.679291965
cg00455876 0.219388947 2.60E-08
cg01707559 0.227893031 0
cg02004872 0.364800101 1.65E-09
cg02011394 0.38866826 0.685018566
cg02050847 0 0.870789442
cg02233190 0.128688259 0.000911261
cg02494853 0.022989835 0
cg02839557 0.249592929 0.011775935
cg02842889 0.205456485 0.776550784
cg03052502 0 0.950947244
cg03155755 0.289321658 0.045876052
cg03244189 0 8.90E-06
cg03443143 0.428275867 0.091278666
cg03683899 0 0.961231281
cg03695421 0.164600152 0.002567672
cg03706273 0.031566573 0

Total number of rows: 485512

Table truncated, full table size 11794 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap