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Sample GSM1524975 Query DataSets for GSM1524975
Status Public on Oct 07, 2015
Title Primary AML patient 1319
Sample type genomic
Source name Primary AML patient
Organism Homo sapiens
Characteristics tissue: blood
dnmt3a mutation status: Wildtype
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3/Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2. Unmethylated and methylated signal intensities included in signals_AML.txt file.
Submission date Oct 14, 2014
Last update date Oct 07, 2015
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (2)
GSE62298 Genome-scale profiling of the DNA methylation landscape in human AML patients
GSE62303 DNA methylation landscape in AML

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.146962467 0.724124688
cg00212031 0.265206245 0.62453276
cg00213748 0 0.547373327
cg00214611 0.435062197 0.345772494
cg00455876 0.21447246 1.56E-08
cg01707559 0.133841912 0
cg02004872 0.118839509 1.04E-06
cg02011394 0.368648249 0.071050848
cg02050847 0.001677056 0.574310238
cg02233190 0.094982069 0.00307085
cg02494853 0.014062705 0
cg02839557 0.24618562 0.133300111
cg02842889 0.431365311 0.528006423
cg03052502 0.084135089 0.353116043
cg03155755 0.294675318 0.44477812
cg03244189 0.130659409 5.05E-13
cg03443143 0 0.780440146
cg03683899 0.035124531 0.412878613
cg03695421 0.220684733 3.43E-05
cg03706273 0.02710166 0

Total number of rows: 485512

Table truncated, full table size 11801 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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