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Sample GSM1524970 Query DataSets for GSM1524970
Status Public on Oct 07, 2015
Title Primary AML patient 1155
Sample type genomic
Source name Primary AML patient
Organism Homo sapiens
Characteristics tissue: blood
dnmt3a mutation status: Wildtype
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3/Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2. Unmethylated and methylated signal intensities included in signals_AML.txt file.
Submission date Oct 14, 2014
Last update date Oct 07, 2015
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (2)
GSE62298 Genome-scale profiling of the DNA methylation landscape in human AML patients
GSE62303 DNA methylation landscape in AML

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.343337252 0.20842823
cg00212031 0.086081348 0.598633395
cg00213748 0.275866438 0.204862521
cg00214611 0.181970973 0.741995485
cg00455876 0.092427005 0.00022418
cg01707559 0.290866622 0
cg02004872 0.305839435 0
cg02011394 0.116792516 0.858631006
cg02050847 0 0.720393306
cg02233190 0.081885335 0.001223884
cg02494853 0.017262469 0
cg02839557 0.545775326 0.485054449
cg02842889 0.373298755 0.284236737
cg03052502 0 0.524898895
cg03155755 0.338904959 0.103555823
cg03244189 0.274083967 2.61E-13
cg03443143 0.159157727 0.101324957
cg03683899 0.177373112 0.240513752
cg03695421 0.270485512 0.00313224
cg03706273 0.164244839 0

Total number of rows: 485512

Table truncated, full table size 11803 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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