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Sample GSM1524969 Query DataSets for GSM1524969
Status Public on Oct 07, 2015
Title Primary AML patient 1154
Sample type genomic
Source name Primary AML patient
Organism Homo sapiens
Characteristics tissue: blood
dnmt3a mutation status: Wildtype
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3/Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2. Unmethylated and methylated signal intensities included in signals_AML.txt file.
Submission date Oct 14, 2014
Last update date Oct 07, 2015
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (2)
GSE62298 Genome-scale profiling of the DNA methylation landscape in human AML patients
GSE62303 DNA methylation landscape in AML

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.31436677 0.678573093
cg00212031 0 0.800417501
cg00213748 0.202632222 0.002368239
cg00214611 0.074812189 0.362682671
cg00455876 0 9.10E-06
cg01707559 0.189171166 0
cg02004872 0.100577283 3.00E-06
cg02011394 0.194013067 0.149207139
cg02050847 0.07461729 0.416895664
cg02233190 0.079613038 0.000432308
cg02494853 0.020695517 0
cg02839557 0 0.906728933
cg02842889 0.314283835 0.599116313
cg03052502 0.142122091 0.610659303
cg03155755 0.296169062 0.108124052
cg03244189 0.279454682 0
cg03443143 0.479739259 0.3366743
cg03683899 0.293673921 0.253585468
cg03695421 0.38355665 1.97E-05
cg03706273 0.080666445 0

Total number of rows: 485512

Table truncated, full table size 11800 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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