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Sample GSM1524964 Query DataSets for GSM1524964
Status Public on Oct 07, 2015
Title Primary AML patient 1300
Sample type genomic
 
Source name Primary AML patient
Organism Homo sapiens
Characteristics tissue: blood
dnmt3a mutation status: Mutant
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3/Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2. Unmethylated and methylated signal intensities included in signals_AML.txt file.
 
Submission date Oct 14, 2014
Last update date Oct 07, 2015
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (2)
GSE62298 Genome-scale profiling of the DNA methylation landscape in human AML patients
GSE62303 DNA methylation landscape in AML

Data table header descriptions
ID_REF
VALUE Average Beta
pval

Data table
ID_REF VALUE pval
cg00050873 0 0.999851397
cg00212031 0 0.999933844
cg00213748 0 0.934795936
cg00214611 0 0.9809868
cg00455876 0.028199757 0.014371803
cg01707559 0.260731194 0
cg02004872 0.425249193 0
cg02011394 0 0.966322713
cg02050847 0 0.999679425
cg02233190 0 0.17631989
cg02494853 0.6514592 0
cg02839557 0 0.923747337
cg02842889 0 0.977626302
cg03052502 0 0.592914963
cg03155755 0.40397514 0.944560073
cg03244189 0.133439423 2.17E-12
cg03443143 0.12103246 0.926634722
cg03683899 0.237717491 0.918993679
cg03695421 0.239842265 0.207729622
cg03706273 0.809794946 0

Total number of rows: 485512

Table truncated, full table size 11706 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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