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Sample GSM1524960 Query DataSets for GSM1524960
Status Public on Oct 07, 2015
Title Primary AML patient 1627
Sample type genomic
Source name Primary AML patient
Organism Homo sapiens
Characteristics tissue: blood
dnmt3a mutation status: Mutant
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3/Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2. Unmethylated and methylated signal intensities included in signals_AML.txt file.
Submission date Oct 14, 2014
Last update date Oct 07, 2015
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (2)
GSE62298 Genome-scale profiling of the DNA methylation landscape in human AML patients
GSE62303 DNA methylation landscape in AML

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.224590405 0.844167884
cg00212031 0.202486778 0.887642055
cg00213748 0 0.834292255
cg00214611 0 0.681587829
cg00455876 0.208426234 2.27E-07
cg01707559 0.358765335 4.24E-07
cg02004872 0.159239075 0.000840384
cg02011394 0.315377682 0.254305854
cg02050847 0 0.513159275
cg02233190 0.084918207 0.001423052
cg02494853 0.010953793 0
cg02839557 0.541258642 0.871423207
cg02842889 0 0.960131121
cg03052502 0.368076971 0.909142266
cg03155755 0.554480121 0.441018298
cg03244189 0.118981581 0.000204858
cg03443143 0.052476246 0.02082692
cg03683899 0 0.832497567
cg03695421 0.160134948 0.075364882
cg03706273 0.032572075 0

Total number of rows: 485512

Table truncated, full table size 11809 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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