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Sample GSM1524959 Query DataSets for GSM1524959
Status Public on Oct 07, 2015
Title Primary AML patient 1616
Sample type genomic
Source name Primary AML patient
Organism Homo sapiens
Characteristics tissue: blood
dnmt3a mutation status: Mutant
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3/Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2. Unmethylated and methylated signal intensities included in signals_AML.txt file.
Submission date Oct 14, 2014
Last update date Jul 08, 2016
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (2)
GSE62298 Genome-scale profiling of the DNA methylation landscape in human AML patients
GSE62303 DNA methylation landscape in AML

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.241141595 0.879607593
cg00212031 0.114996438 0.598423384
cg00213748 0.367540362 0.575587147
cg00214611 0.42026323 0.648485155
cg00455876 0.180372502 3.76E-05
cg01707559 0.266327856 0
cg02004872 0.264608329 1.11E-16
cg02011394 0.221604792 0.407257477
cg02050847 0.120782467 0.121745184
cg02233190 0.076875053 7.62E-05
cg02494853 0.017044085 0
cg02839557 0.508055324 0.711300513
cg02842889 0.296372083 0.365321123
cg03052502 0.053221179 0.730999736
cg03155755 0.565974643 0.170273561
cg03244189 0.170001498 2.41E-11
cg03443143 0.282425928 0.249999679
cg03683899 0.086268566 0.317660352
cg03695421 0.173404275 0.004861218
cg03706273 0.028139466 0

Total number of rows: 485512

Table truncated, full table size 11805 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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