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Sample GSM1524958 Query DataSets for GSM1524958
Status Public on Oct 07, 2015
Title Primary AML patient 1552
Sample type genomic
Source name Primary AML patient
Organism Homo sapiens
Characteristics tissue: blood
dnmt3a mutation status: Wildtype
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3/Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2. Unmethylated and methylated signal intensities included in signals_AML.txt file.
Submission date Oct 14, 2014
Last update date Oct 07, 2015
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (2)
GSE62298 Genome-scale profiling of the DNA methylation landscape in human AML patients
GSE62303 DNA methylation landscape in AML

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.418481379 0.143280679
cg00212031 0.132550268 0.932851428
cg00213748 0.227479527 0.00847715
cg00214611 0.480010763 0.022940163
cg00455876 0.183385827 3.62E-12
cg01707559 0.256168838 0
cg02004872 0.144758748 9.77E-14
cg02011394 0.209340787 0.43570105
cg02050847 0.116769118 0.390609243
cg02233190 0.274038905 4.01E-05
cg02494853 0.02728111 0
cg02839557 0 0.700591606
cg02842889 0.38068282 0.5536538
cg03052502 0.176382974 0.63710649
cg03155755 0.291480606 0.013471947
cg03244189 0.2100769 1.27E-13
cg03443143 0.196517371 0.229061894
cg03683899 0.12619884 0.103529372
cg03695421 0.20857194 0.000117554
cg03706273 0.035483492 0

Total number of rows: 485512

Table truncated, full table size 11810 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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