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Sample GSM1521070 Query DataSets for GSM1521070
Status Public on Oct 08, 2014
Title HEK293_control_2 (DNA)
Sample type genomic
 
Source name HEK293 cells, no treatment, rep 2
Organism Homo sapiens
Characteristics cell line: HEK293 human embryonic kidney cells
treatment: no treatment
Treatment protocol The MAML1 cell lines were constructed by transfecting human embryonic kidney HEK293 cells (ATCC, Manassas, VA, USA) with the pcDNA3.1-MAML1 vector, and stable clones were selected with geneticin. For siRNA experiments, HEK293 cells were transiently transfected with 100 nM MAML1 siRNA (a predesigned MAML1 SMARTpool set of 4 siRNAs; Dharmacon, Lafayette Colorado, USA) or control siRNA using DharmaFECT 1 siRNA reagents (Dharmacon) in 6-well plates. DNA was collected 72 hours post-transfection.
Growth protocol HEK293 cells were cultured in DMEM supplemented with 10% FBS and 1% penicillin-streptomycin (all from Gibco, Life Technologies).
Extracted molecule genomic DNA
Extraction protocol Invisorb Spin Tissue Mini Kit (Invitek, Nordic Biolabs)
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description Sample name: HEK293 2
Data processing Illumina GenomeStudio software (v. 2010.2)
 
Submission date Oct 08, 2014
Last update date Oct 08, 2014
Contact name Milica Putnik
Organization name Karolinska Institute
Department Biosciences and Nutrition
Street address Hälsovägen 7
City Huddinge
ZIP/Postal code 14183
Country Sweden
 
Platform ID GPL13534
Series (2)
GSE62177 Mastermind-like protein 1 regulates DNA methylation and expression of early developmental gene clusters in human embryonic kidney cells (methylation)
GSE62178 Mastermind-like protein 1 regulates DNA methylation and expression of early developmental gene clusters in human embryonic kidney cells

Data table header descriptions
ID_REF
VALUE Average Beta

Data table
ID_REF VALUE
cg00000029 0.7510223
cg00000108 0.8917027
cg00000109 0.9064603
cg00000165 0.8812052
cg00000236 0.8365922
cg00000289 0.6467733
cg00000292 0.8799397
cg00000321 0.7965576
cg00000363 0.8567234
cg00000622 0.02000776
cg00000658 0.8115343
cg00000714 0.3439268
cg00000721 0.9057006
cg00000734 0.0947127
cg00000769 0.06987059
cg00000807 0.8618805
cg00000884 0.7401561
cg00000905 0.1203214
cg00000924 0.4904706
cg00000948 0.8682298

Total number of rows: 485577

Table truncated, full table size 10005 Kbytes.




Supplementary file Size Download File type/resource
GSM1521070_6026818158_R03C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1521070_6026818158_R03C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table
Processed data are available on Series record

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