|
| Status |
Public on Aug 01, 2015 |
| Title |
GM12815 JQ1 |
| Sample type |
genomic |
| |
|
| Source name |
genomic DNA from cervical smear 2
|
| Organism |
Homo sapiens |
| Characteristics |
gender: Female
cell line: GM12815
sample type: lymphoblasoid cell line
agent: 250 nM JQ1
|
| Biomaterial provider |
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12815
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA was extracted and purified from LCL samples using phenol/choloroform
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
| Description |
lymphoblasoid cell line
|
| Data processing |
BeadStudio software v3.2
|
| |
|
| Submission date |
Oct 06, 2014 |
| Last update date |
Aug 01, 2015 |
| Contact name |
Erika Moen |
| E-mail(s) |
emoen@uchicago.edu
|
| Organization name |
University of Chicago
|
| Department |
Medicine
|
| Lab |
Godley
|
| Street address |
900 E 57th St.
|
| City |
Chicago |
| State/province |
IL |
| ZIP/Postal code |
60637 |
| Country |
USA |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE62111 |
Epigenome analysis of the effects of JQ1 on DNA methylation |
|
