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Sample GSM1519786 Query DataSets for GSM1519786
Status Public on Aug 01, 2015
Title GM12892 JQ1
Sample type genomic
Source name genomic DNA from cervical smear 2
Organism Homo sapiens
Characteristics gender: Female
cell line: GM12892
sample type: lymphoblasoid cell line
agent: 250 nM JQ1
Biomaterial provider
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from LCL samples using phenol/choloroform
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description lymphoblasoid cell line
Data processing BeadStudio software v3.2
Submission date Oct 06, 2014
Last update date Aug 01, 2015
Contact name Erika Moen
Organization name University of Chicago
Department Medicine
Lab Godley
Street address 900 E 57th St.
City Chicago
State/province IL
ZIP/Postal code 60637
Country USA
Platform ID GPL13534
Series (1)
GSE62111 Epigenome analysis of the effects of JQ1 on DNA methylation

Data table header descriptions
VALUE Average Beta
Detection Pval

Data table
ID_REF VALUE Detection Pval
cg00000029 0.8873 0
cg00000108 0.94081 0
cg00000109 0.50595 0
cg00000165 0.20115 0
cg00000236 0.88051 0
cg00000289 0.28478 0
cg00000292 0.9101 0
cg00000321 0.04121 0
cg00000363 0.08466 0
cg00000622 0.00661 0
cg00000658 0.77825 0
cg00000714 0.13157 0
cg00000721 0.44572 0
cg00000734 0.05744 0
cg00000769 0.03208 0
cg00000807 0.47278 0
cg00000884 0.70166 0
cg00000905 0.10277 0
cg00000924 0.52846 0
cg00000948 0.889 0

Total number of rows: 485577

Table truncated, full table size 9901 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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