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Sample GSM1519598 Query DataSets for GSM1519598
Status Public on Oct 07, 2014
Title CD161++_Patient1
Sample type RNA
Source name CD8+ T cells
Organism Homo sapiens
Characteristics tissue: Peripheral Blood cells
cell type: CD8+ T cells
Treatment protocol CD8+ T cell subsets were sorted using a FACS sorter
Growth protocol Cells taken ex vivo from healthy donors and separated using Ficoll centrifugation
Extracted molecule total RNA
Extraction protocol RNA was extracted from cells using a Qiagen Rneasy kit
Label Cy3
Label protocol Biotinylated cRNA Probes were prepared using illumina TotalPrep-96 Ambion # 4393543
Hybridization protocol A total of 750ng of biotin-labeled cRNA from each sample was used in the hybridization process at 58C for 18 h. The hybridized BeadChip was washed and labeled with streptavidin-Cy3 according to the Illumina protocols.
Scan protocol Chips were scanned with Illumina BeadArray Reader accordingly
Description Gene expression in FACS sorted CD161++ CD8+ T cells
Data processing GenomeStudio (Illumina Inc) was used for data extraction accordingly
Submission date Oct 06, 2014
Last update date Oct 07, 2014
Contact name Joannah R Fergusson
Organization name University of Oxford
Department Peter Medawar Building for Pathogen Research
Street address South Parks Road
City Oxford
State/province select a state
ZIP/Postal code OX1 3SY
Country United Kingdom
Platform ID GPL6884
Series (2)
GSE62096 CD161 defines a transcriptional and functional phenotype shared across distinct human T cell lineages (CD 8)
GSE62099 CD161 defines a transcriptional and functional phenotype shared across distinct human T cell lineages

Data table header descriptions
VALUE vsn-normalised signal intensities
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1809034 6.508749393 0
ILMN_1660305 7.818379105 0
ILMN_1792173 7.932283331 0
ILMN_1762337 6.027583671 0.62603
ILMN_2055271 6.222123398 0.12603
ILMN_1736007 6.2032381 0.14795
ILMN_1814316 6.100839467 0.39041
ILMN_2359168 6.067811933 0.48493
ILMN_1731507 5.95718746 0.8411
ILMN_1787689 6.044658803 0.57671
ILMN_1745607 5.904380657 0.9411
ILMN_2136495 6.160799196 0.23014
ILMN_1668111 6.016808167 0.67397
ILMN_2295559 6.139102224 0.28356
ILMN_1735045 6.067811933 0.4863
ILMN_1680754 5.827538592 0.98767
ILMN_2375184 6.12712852 0.31781
ILMN_1659452 6.238911346 0.10137
ILMN_1767388 6.012475329 0.68493
ILMN_1675204 5.909050062 0.93562

Total number of rows: 48803

Table truncated, full table size 1457 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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