GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1519018 Query DataSets for GSM1519018
Status Public on Mar 01, 2015
Title LNCaP cells untreated, biological replicate 2
Sample type genomic
Source name LNCaP cells untreated
Organism Homo sapiens
Characteristics cell line: LNCaP
cell type: human non-invasive prostate cancer cell line
treatment: none
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified from human prostate cancer cell lines using the Qiagen DNeasy Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChip using standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting.
Data processing BeadStudio software v3.2
Submission date Oct 03, 2014
Last update date Mar 01, 2015
Contact name Barbara Stefanska
Organization name The University of British Columbia
Department Land and Food Systems
Lab Stefanska Lab
Street address 2205 East Mall
City Vancouver
State/province BC
ZIP/Postal code V6T 1Z4
Country Canada
Platform ID GPL13534
Series (1)
GSE62053 S-adenosylmethionine (SAM) changes DNA methylation patterns in prostate cancer cells

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.8419443
cg00000108 0.7361563
cg00000109 0.8162388
cg00000165 0.7798377
cg00000236 0.8385323
cg00000289 0.4638006
cg00000292 0.8060374
cg00000321 0.4715016
cg00000363 0.8465776
cg00000622 0.02715515
cg00000658 0.800759
cg00000714 0.1632877
cg00000721 0.8944001
cg00000734 0.08269303
cg00000769 0.05928314
cg00000807 0.777028
cg00000884 0.1230248
cg00000905 0.07512176
cg00000924 0.3887015
cg00000948 0.7124805

Total number of rows: 485577

Table truncated, full table size 10044 Kbytes.

Supplementary file Size Download File type/resource
GSM1519018_8221924109_R06C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1519018_8221924109_R06C02_Red.idat.gz 4.2 Mb (ftp)(http) IDAT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap