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Sample GSM1519017 Query DataSets for GSM1519017
Status Public on Mar 01, 2015
Title LNCaP cells untreated, biological replicate 1
Sample type genomic
Source name LNCaP cells untreated
Organism Homo sapiens
Characteristics cell line: LNCaP
cell type: human non-invasive prostate cancer cell line
treatment: none
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted and purified from human prostate cancer cell lines using the Qiagen DNeasy Kit according to standard instructions.
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol.
Hybridization protocol Bisulfite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChip using standard Illumina protocol.
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting.
Data processing BeadStudio software v3.2
Submission date Oct 03, 2014
Last update date Mar 01, 2015
Contact name Barbara Stefanska
Organization name The University of British Columbia
Department Land and Food Systems
Lab Stefanska Lab
Street address 2205 East Mall
City Vancouver
State/province BC
ZIP/Postal code V6T 1Z4
Country Canada
Platform ID GPL13534
Series (1)
GSE62053 S-adenosylmethionine (SAM) changes DNA methylation patterns in prostate cancer cells

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.8468516
cg00000108 0.7351135
cg00000109 0.8020916
cg00000165 0.8308264
cg00000236 0.8300044
cg00000289 0.5836303
cg00000292 0.7766666
cg00000321 0.5390658
cg00000363 0.8508866
cg00000622 0.007748696
cg00000658 0.7754346
cg00000714 0.1707186
cg00000721 0.9140693
cg00000734 0.09536195
cg00000769 0.05026952
cg00000807 0.7730143
cg00000884 0.1512832
cg00000905 0.09036428
cg00000924 0.4219987
cg00000948 0.7054152

Total number of rows: 485577

Table truncated, full table size 10029 Kbytes.

Supplementary file Size Download File type/resource
GSM1519017_8221924109_R05C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1519017_8221924109_R05C02_Red.idat.gz 4.2 Mb (ftp)(http) IDAT
Processed data included within Sample table

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